J3_8YDH_018
3D structure
- PDB id
- 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.55 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 8YDH|1|1|U|2833, 8YDH|1|1|A|2835
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8YDH|1|1|G|2812
8YDH|1|1|A|2813
8YDH|1|1|A|2814
8YDH|1|1|C|2815
*
8YDH|1|1|G|2831
8YDH|1|1|U|2832
8YDH|1|1|U|2833
8YDH|1|1|G|2834
8YDH|1|1|A|2835
8YDH|1|1|U|2836
*
8YDH|1|1|A|2882
8YDH|1|1|A|2883
8YDH|1|1|U|2884
8YDH|1|1|G|2885
8YDH|1|1|A|2886
8YDH|1|1|A|2887
8YDH|1|1|C|2888
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L32
- Chain c
- 50S ribosomal protein L3
- Chain n
- 50S ribosomal protein L17
- Chain s
- 50S ribosomal protein L22
Coloring options: