J3_8YDH_025

3D structure

PDB id

8YDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.55 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8YDH|1|3|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YDH|1|3|C|826
8YDH|1|3|U|827
8YDH|1|3|U|828
8YDH|1|3|G|829
*
8YDH|1|3|C|857
8YDH|1|3|G|858
8YDH|1|3|G|859
8YDH|1|3|A|860
8YDH|1|3|G|861
*
8YDH|1|3|C|868
8YDH|1|3|G|869
8YDH|1|3|U|870
8YDH|1|3|U|871
8YDH|1|3|A|872
8YDH|1|3|A|873
8YDH|1|3|G|874

Current chains

Chain 3

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain M

30S ribosomal protein S8

Chain Z

30S ribosomal protein S21