J3_8YDH_025
3D structure
- PDB id
- 8YDH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass1) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.55 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 8YDH|1|3|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDH_025 not in the Motif Atlas
- Homologous match to J3_8B0X_004
- Geometric discrepancy: 0.0778
- The information below is about J3_8B0X_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02285.1
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8YDH|1|3|C|826
8YDH|1|3|U|827
8YDH|1|3|U|828
8YDH|1|3|G|829
*
8YDH|1|3|C|857
8YDH|1|3|G|858
8YDH|1|3|G|859
8YDH|1|3|A|860
8YDH|1|3|G|861
*
8YDH|1|3|C|868
8YDH|1|3|G|869
8YDH|1|3|U|870
8YDH|1|3|U|871
8YDH|1|3|A|872
8YDH|1|3|A|873
8YDH|1|3|G|874
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain M
- 30S ribosomal protein S8
- Chain Z
- 30S ribosomal protein S21
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