J3_8YDI_001
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GC*GCGAAAAG*CC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDI_001 not in the Motif Atlas
- Geometric match to J3_8B0X_014
- Geometric discrepancy: 0.1023
- The information below is about J3_8B0X_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
8YDI|1|1|G|30
8YDI|1|1|C|31
*
8YDI|1|1|G|474
8YDI|1|1|C|475
8YDI|1|1|G|476
8YDI|1|1|A|477
8YDI|1|1|A|478
8YDI|1|1|A|479
8YDI|1|1|A|480
8YDI|1|1|G|481
*
8YDI|1|1|C|509
8YDI|1|1|C|510
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain q
- 50S ribosomal protein L20
- Chain u
- 50S ribosomal protein L24
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