J3_8YDI_006
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 8YDI|1|1|U|686, 8YDI|1|1|A|792, 8YDI|1|1|A|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDI_006 not in the Motif Atlas
- Geometric match to J3_9E6Q_007
- Geometric discrepancy: 0.1687
- The information below is about J3_9E6Q_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8YDI|1|1|U|683
8YDI|1|1|G|684
8YDI|1|1|A|685
8YDI|1|1|U|686
8YDI|1|1|C|687
8YDI|1|1|U|688
8YDI|1|1|A|689
*
8YDI|1|1|U|773
8YDI|1|1|G|774
8YDI|1|1|G|775
*
8YDI|1|1|C|791
8YDI|1|1|A|792
8YDI|1|1|A|793
8YDI|1|1|A|794
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L34
- Chain b
- 50S ribosomal protein L2
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