J3_9E6Q_007

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGAUCUA*UAG*CAAG

Length

14 nucleotides

Bulged bases

9E6Q|1|1|U|803, 9E6Q|1|1|A|910, 9E6Q|1|1|A|911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

9E6Q|1|1|C|800
9E6Q|1|1|G|801
9E6Q|1|1|A|802
9E6Q|1|1|U|803
9E6Q|1|1|C|804
9E6Q|1|1|U|805
9E6Q|1|1|A|806
*
9E6Q|1|1|U|891
9E6Q|1|1|A|892
9E6Q|1|1|G|893
*
9E6Q|1|1|C|909
9E6Q|1|1|A|910
9E6Q|1|1|A|911
9E6Q|1|1|G|912

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AA

Large ribosomal subunit protein uL2

Chain AM

50S ribosomal protein L15e

Chain Ad

Large ribosomal subunit protein eL37