J3_8YDI_012

3D structure

PDB id

8YDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YDI_012 not in the Motif Atlas

Geometric match to J3_8B0X_035

Geometric discrepancy: 0.1034

The information below is about J3_8B0X_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8YDI|1|1|G|1424
8YDI|1|1|G|1425
8YDI|1|1|G|1426
8YDI|1|1|A|1427
8YDI|1|1|C|1428
8YDI|1|1|G|1429
*
8YDI|1|1|C|1564
8YDI|1|1|C|1565
*
8YDI|1|1|G|1568
8YDI|1|1|A|1569
8YDI|1|1|A|1570
8YDI|1|1|A|1571
8YDI|1|1|A|1572
8YDI|1|1|G|1573
8YDI|1|1|C|1574

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2