J3_8YDI_014
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 8YDI|1|1|U|2390, 8YDI|1|1|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDI_014 not in the Motif Atlas
- Geometric match to J3_9E6Q_015
- Geometric discrepancy: 0.343
- The information below is about J3_9E6Q_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8YDI|1|1|G|2282
8YDI|1|1|C|2283
8YDI|1|1|A|2284
*
8YDI|1|1|U|2384
8YDI|1|1|C|2385
8YDI|1|1|A|2386
8YDI|1|1|U|2387
8YDI|1|1|A|2388
8YDI|1|1|G|2389
8YDI|1|1|U|2390
8YDI|1|1|G|2391
8YDI|1|1|A|2392
8YDI|1|1|U|2393
8YDI|1|1|C|2394
8YDI|1|1|C|2395
*
8YDI|1|1|G|2421
8YDI|1|1|C|2422
8YDI|1|1|U|2423
8YDI|1|1|C|2424
8YDI|1|1|A|2425
8YDI|1|1|A|2426
8YDI|1|1|C|2427
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 7
- tRNA(fMet)
- Chain C
- 50S ribosomal protein L33
- Chain E
- 50S ribosomal protein L35
- Chain l
- 50S ribosomal protein L15
- Chain w
- 50S ribosomal protein L27
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