J3_8YDI_020
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GC*GGAAUAU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDI_020 not in the Motif Atlas
- Geometric match to J3_8B0X_001
- Geometric discrepancy: 0.1013
- The information below is about J3_8B0X_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.1
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8YDI|1|3|G|46
8YDI|1|3|C|47
*
8YDI|1|3|G|361
8YDI|1|3|G|362
8YDI|1|3|A|363
8YDI|1|3|A|364
8YDI|1|3|U|365
8YDI|1|3|A|366
8YDI|1|3|U|367
*
8YDI|1|3|A|393
8YDI|1|3|G|394
8YDI|1|3|C|395
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain Q
- 30S ribosomal protein S12
- Chain U
- 30S ribosomal protein S16
Coloring options: