J3_8YDI_033
3D structure
- PDB id
- 8YDI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P state 1 (subclass 2) containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UAU*AGAC*GGUG
- Length
- 11 nucleotides
- Bulged bases
- 8YDI|1|3|U|1183
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDI_033 not in the Motif Atlas
- Geometric match to J3_8B0X_012
- Geometric discrepancy: 0.1044
- The information below is about J3_8B0X_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.5
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8YDI|1|3|U|1116
8YDI|1|3|A|1117
8YDI|1|3|U|1118
*
8YDI|1|3|A|1155
8YDI|1|3|G|1156
8YDI|1|3|A|1157
8YDI|1|3|C|1158
*
8YDI|1|3|G|1181
8YDI|1|3|G|1182
8YDI|1|3|U|1183
8YDI|1|3|G|1184
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain G
- 30S ribosomal protein S2
- Chain N
- 30S ribosomal protein S9
- Chain O
- 30S ribosomal protein S10
- Chain S
- 30S ribosomal protein S14
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