J3_8YDJ_010

3D structure

PDB id

8YDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8YDJ|1|1|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YDJ_010 not in the Motif Atlas

Geometric match to J3_8B0X_019

Geometric discrepancy: 0.1368

The information below is about J3_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8YDJ|1|1|C|1306
8YDJ|1|1|A|1307
8YDJ|1|1|A|1308
8YDJ|1|1|G|1309
*
8YDJ|1|1|C|1605
8YDJ|1|1|C|1606
8YDJ|1|1|C|1607
8YDJ|1|1|A|1608
8YDJ|1|1|A|1609
8YDJ|1|1|A|1610
8YDJ|1|1|C|1611
*
8YDJ|1|1|G|1620
8YDJ|1|1|U|1621
8YDJ|1|1|G|1622

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34