J3_8YDJ_016
3D structure
- PDB id
- 8YDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E.coli transcription translation coupling complex in TTC-P containing mRNA with 39-mer spacer, NusG, NusA, fMet-tRNA(iMet), Phe-tRNA(Phe), and viomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- CAUC*GUA*UUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 8YDJ|1|1|A|2518, 8YDJ|1|1|U|2519, 8YDJ|1|1|A|2564, 8YDJ|1|1|A|2565
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YDJ_016 not in the Motif Atlas
- Geometric match to J3_4WF9_009
- Geometric discrepancy: 0.2467
- The information below is about J3_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8YDJ|1|1|C|2517
8YDJ|1|1|A|2518
8YDJ|1|1|U|2519
8YDJ|1|1|C|2520
*
8YDJ|1|1|G|2545
8YDJ|1|1|U|2546
8YDJ|1|1|A|2547
*
8YDJ|1|1|U|2561
8YDJ|1|1|U|2562
8YDJ|1|1|U|2563
8YDJ|1|1|A|2564
8YDJ|1|1|A|2565
8YDJ|1|1|A|2566
8YDJ|1|1|G|2567
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
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