J3_8YLD_001

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YLD_001 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.1676

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8YLD|1|2|A|41
8YLD|1|2|G|42
*
8YLD|1|2|C|433
8YLD|1|2|G|434
8YLD|1|2|C|435
8YLD|1|2|A|436
8YLD|1|2|A|437
8YLD|1|2|A|438
8YLD|1|2|U|439
*
8YLD|1|2|A|464
8YLD|1|2|G|465
8YLD|1|2|U|466

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SW

Small ribosomal subunit protein uS4A

Chain Sc

Small ribosomal subunit protein uS12A

Chain x

Elongation factor 2