J3_8YLD_002

3D structure

PDB id

8YLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8YLD|1|2|A|226, 8YLD|1|2|U|227

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLD|1|2|A|213
8YLD|1|2|G|214
8YLD|1|2|A|215
8YLD|1|2|U|216
8YLD|1|2|A|217
8YLD|1|2|A|218
8YLD|1|2|A|219
8YLD|1|2|A|220
8YLD|1|2|A|221
8YLD|1|2|A|222
8YLD|1|2|U|223
8YLD|1|2|C|224
8YLD|1|2|A|225
8YLD|1|2|A|226
8YLD|1|2|U|227
8YLD|1|2|G|228
*
8YLD|1|2|C|237
8YLD|1|2|U|238
8YLD|1|2|C|239
8YLD|1|2|U|240
8YLD|1|2|U|241
8YLD|1|2|U|242
8YLD|1|2|G|243
*
8YLD|1|2|C|250
8YLD|1|2|A|251
8YLD|1|2|U|252

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain ST

Small ribosomal subunit protein eS6A

Chain SX

Small ribosomal subunit protein uS17A