J3_8YLD_021
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8YLD|1|A|A|398, 8YLD|1|A|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YLD_021 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.1122
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8YLD|1|A|A|369
8YLD|1|A|U|370
8YLD|1|A|G|371
8YLD|1|A|A|372
8YLD|1|A|A|373
8YLD|1|A|A|374
8YLD|1|A|A|375
8YLD|1|A|G|376
8YLD|1|A|A|377
8YLD|1|A|A|378
8YLD|1|A|C|379
*
8YLD|1|A|G|390
8YLD|1|A|A|391
8YLD|1|A|G|392
8YLD|1|A|U|393
8YLD|1|A|G|394
8YLD|1|A|A|395
8YLD|1|A|A|396
8YLD|1|A|A|397
8YLD|1|A|A|398
8YLD|1|A|A|399
8YLD|1|A|G|400
8YLD|1|A|U|401
8YLD|1|A|A|402
8YLD|1|A|C|403
8YLD|1|A|G|404
*
8YLD|1|C|C|19
8YLD|1|C|U|20
Current chains
- Chain A
- 25S rRNA
- Chain C
- 5.8S rRNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL4A
- Chain R
- Large ribosomal subunit protein uL22A
- Chain a
- Large ribosomal subunit protein uL24A
- Chain n
- Large ribosomal subunit protein eL39
Coloring options: