J3_8YLD_025
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 8YLD|1|A|A|1065, 8YLD|1|A|U|1094, 8YLD|1|A|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YLD_025 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.3437
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_09667.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8YLD|1|A|U|986
8YLD|1|A|U|987
*
8YLD|1|A|A|1062
8YLD|1|A|G|1063
8YLD|1|A|A|1064
8YLD|1|A|A|1065
8YLD|1|A|G|1066
*
8YLD|1|A|C|1092
8YLD|1|A|A|1093
8YLD|1|A|U|1094
8YLD|1|A|U|1095
8YLD|1|A|U|1096
8YLD|1|A|G|1097
8YLD|1|A|A|1098
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain I
- Large ribosomal subunit protein uL30A
- Chain V
- Large ribosomal subunit protein eL21A
- Chain d
- Large ribosomal subunit protein eL29
Coloring options: