J3_8YLD_032
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGACG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YLD_032 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.1194
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.1
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8YLD|1|A|A|1654
8YLD|1|A|G|1655
8YLD|1|A|A|1656
8YLD|1|A|C|1657
8YLD|1|A|G|1658
*
8YLD|1|A|C|1791
8YLD|1|A|C|1792
*
8YLD|1|A|G|1796
8YLD|1|A|A|1797
8YLD|1|A|A|1798
8YLD|1|A|A|1799
8YLD|1|A|A|1800
8YLD|1|A|U|1801
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain D
- Large ribosomal subunit protein uL2A
- Chain i
- Large ribosomal subunit protein eL34A
- Chain r
- Large ribosomal subunit protein eL43A
Coloring options: