J3_8YLD_035
3D structure
- PDB id
- 8YLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 4a (S4a) of yeast 80S ribosome bound to 2 tRNAs and open eEF3 and eEF2 during translocation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8YLD|1|A|A|2703, 8YLD|1|A|A|2705
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YLD_035 not in the Motif Atlas
- Homologous match to J3_8P9A_062
- Geometric discrepancy: 0.142
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8YLD|1|A|C|2664
8YLD|1|A|U|2665
8YLD|1|A|C|2666
*
8YLD|1|A|G|2690
8YLD|1|A|A|2691
8YLD|1|A|A|2692
*
8YLD|1|A|U|2701
8YLD|1|A|A|2702
8YLD|1|A|A|2703
8YLD|1|A|A|2704
8YLD|1|A|A|2705
8YLD|1|A|G|2706
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- Large ribosomal subunit protein uL18
- Chain M
- Large ribosomal subunit protein uL5B
- Chain V
- Large ribosomal subunit protein eL21A
- Chain q
- Large ribosomal subunit protein eL42A
Coloring options: