J3_8YLR_002

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

8YLR|1|2|A|225, 8YLR|1|2|A|226, 8YLR|1|2|U|227

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|2|A|213
8YLR|1|2|G|214
8YLR|1|2|A|215
8YLR|1|2|U|216
8YLR|1|2|A|217
8YLR|1|2|A|218
8YLR|1|2|A|219
8YLR|1|2|A|220
8YLR|1|2|A|221
8YLR|1|2|A|222
8YLR|1|2|U|223
8YLR|1|2|C|224
8YLR|1|2|A|225
8YLR|1|2|A|226
8YLR|1|2|U|227
8YLR|1|2|G|228
*
8YLR|1|2|C|237
8YLR|1|2|U|238
8YLR|1|2|C|239
8YLR|1|2|U|240
8YLR|1|2|U|241
8YLR|1|2|U|242
8YLR|1|2|G|243
*
8YLR|1|2|C|250
8YLR|1|2|A|251
8YLR|1|2|U|252

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain ST

Small ribosomal subunit protein eS6A

Chain SX

Small ribosomal subunit protein uS17A