J3_8YLR_005

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YLR_005 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.1323

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.1

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

2

Unit IDs

8YLR|1|2|A|760
8YLR|1|2|G|761
8YLR|1|2|A|762
8YLR|1|2|G|763
*
8YLR|1|2|C|773
8YLR|1|2|A|774
8YLR|1|2|G|775
*
8YLR|1|2|U|785
8YLR|1|2|C|786
8YLR|1|2|G|787
8YLR|1|2|A|788
8YLR|1|2|A|789
8YLR|1|2|U|790

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein eS4A

Chain SW

Small ribosomal subunit protein uS4A

Chain Sd

Small ribosomal subunit protein eS24A