J3_8YLR_009

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|2|U|1168
8YLR|1|2|G|1169
8YLR|1|2|G|1170
8YLR|1|2|A|1171
*
8YLR|1|2|U|1468
8YLR|1|2|A|1469
8YLR|1|2|C|1470
*
8YLR|1|2|G|1574
8YLR|1|2|G|1575
8YLR|1|2|A|1576
8YLR|1|2|A|1577

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SB

Small ribosomal subunit protein uS7

Chain SF

Small ribosomal subunit protein uS9A

Chain SH

Small ribosomal subunit protein uS13A

Chain SI

Small ribosomal subunit protein eS19A

Chain u

Transfer RNA; tRNA