J3_8YLR_010

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUAAUUU*GGGGAAACUCAC*GGCCG

Length

25 nucleotides

Bulged bases

8YLR|1|2|G|1199, 8YLR|1|2|G|1201, 8YLR|1|2|A|1203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YLR_010 not in the Motif Atlas

Homologous match to J3_8C3A_040

Geometric discrepancy: 0.2032

The information below is about J3_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.3

Basepair signature

cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8YLR|1|2|C|1180
8YLR|1|2|U|1181
8YLR|1|2|U|1182
8YLR|1|2|A|1183
8YLR|1|2|A|1184
8YLR|1|2|U|1185
8YLR|1|2|U|1186
8YLR|1|2|U|1187
*
8YLR|1|2|G|1198
8YLR|1|2|G|1199
8YLR|1|2|G|1200
8YLR|1|2|G|1201
8YLR|1|2|A|1202
8YLR|1|2|A|1203
8YLR|1|2|A|1204
8YLR|1|2|C|1205
8YLR|1|2|U|1206
8YLR|1|2|C|1207
8YLR|1|2|A|1208
8YLR|1|2|C|1209
*
8YLR|1|2|G|1454
8YLR|1|2|G|1455
8YLR|1|2|C|1456
8YLR|1|2|C|1457
8YLR|1|2|G|1458

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein uS19

Chain SH

Small ribosomal subunit protein uS13A

Chain SJ

Small ribosomal subunit protein uS10

Chain SM

Small ribosomal subunit protein uS14A

Chain SN

Small ribosomal subunit protein eS31

Chain t

Transfer RNA; tRNA