J3_8YLR_012

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAG*CGAGAC*GCA

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|2|U|1285
8YLR|1|2|U|1286
8YLR|1|2|A|1287
8YLR|1|2|G|1288
*
8YLR|1|2|C|1327
8YLR|1|2|G|1328
8YLR|1|2|A|1329
8YLR|1|2|G|1330
8YLR|1|2|A|1331
8YLR|1|2|C|1332
*
8YLR|1|2|G|1419
8YLR|1|2|C|1420
8YLR|1|2|A|1421

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SA

Small ribosomal subunit protein uS3

Chain SF

Small ribosomal subunit protein uS9A

Chain SG

Small ribosomal subunit protein eS17A

Chain SJ

Small ribosomal subunit protein uS10

Chain SM

Small ribosomal subunit protein uS14A