J3_8YLR_013

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGUGG*UUGUC*GAUAACGA

Length

19 nucleotides

Bulged bases

8YLR|1|2|A|1321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|2|U|1290
8YLR|1|2|G|1291
8YLR|1|2|G|1292
8YLR|1|2|U|1293
8YLR|1|2|G|1294
8YLR|1|2|G|1295
*
8YLR|1|2|U|1302
8YLR|1|2|U|1303
8YLR|1|2|G|1304
8YLR|1|2|U|1305
8YLR|1|2|C|1306
*
8YLR|1|2|G|1318
8YLR|1|2|A|1319
8YLR|1|2|U|1320
8YLR|1|2|A|1321
8YLR|1|2|A|1322
8YLR|1|2|C|1323
8YLR|1|2|G|1324
8YLR|1|2|A|1325

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein eS17A

Chain SP

Small ribosomal subunit protein uS2A

Chain SR

Small ribosomal subunit protein uS5