J3_8YLR_022

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAACUAU*AUAG*CGAA

Length

16 nucleotides

Bulged bases

8YLR|1|A|A|817, 8YLR|1|A|G|924, 8YLR|1|A|A|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|A|U|814
8YLR|1|A|G|815
8YLR|1|A|A|816
8YLR|1|A|A|817
8YLR|1|A|C|818
8YLR|1|A|U|819
8YLR|1|A|A|820
8YLR|1|A|U|821
*
8YLR|1|A|A|904
8YLR|1|A|U|905
8YLR|1|A|A|906
8YLR|1|A|G|907
*
8YLR|1|A|C|923
8YLR|1|A|G|924
8YLR|1|A|A|925
8YLR|1|A|A|926

Current chains

Chain A

25S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2A

Chain P

Large ribosomal subunit protein eL15A

Chain l

Large ribosomal subunit protein eL37A