J3_8YLR_033

3D structure

PDB id

8YLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 6 (S6) of yeast 80S ribosome bound to 2 tRNAs and eEF2 and eEF3 during tranlocation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGCUGG*CACGUUCUAGCAUUCAAG*UGAU

Length

28 nucleotides

Bulged bases

8YLR|1|A|G|2549, 8YLR|1|A|U|2550, 8YLR|1|A|U|2551, 8YLR|1|A|C|2552, 8YLR|1|A|U|2553, 8YLR|1|A|A|2554, 8YLR|1|A|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YLR|1|A|A|2529
8YLR|1|A|G|2530
8YLR|1|A|C|2531
8YLR|1|A|U|2532
8YLR|1|A|G|2533
8YLR|1|A|G|2534
*
8YLR|1|A|C|2546
8YLR|1|A|A|2547
8YLR|1|A|C|2548
8YLR|1|A|G|2549
8YLR|1|A|U|2550
8YLR|1|A|U|2551
8YLR|1|A|C|2552
8YLR|1|A|U|2553
8YLR|1|A|A|2554
8YLR|1|A|G|2555
8YLR|1|A|C|2556
8YLR|1|A|A|2557
8YLR|1|A|U|2558
8YLR|1|A|U|2559
8YLR|1|A|C|2560
8YLR|1|A|A|2561
8YLR|1|A|A|2562
8YLR|1|A|G|2563
*
8YLR|1|A|U|2578
8YLR|1|A|G|2579
8YLR|1|A|A|2580
8YLR|1|A|U|2581

Current chains

Chain A

25S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL2A

Chain J

Large ribosomal subunit protein eL8A

Chain Z

Large ribosomal subunit protein uL23

Chain b

Large ribosomal subunit protein eL27A

Chain e

Large ribosomal subunit protein eL30

Chain i

Large ribosomal subunit protein eL34A

Chain r

Large ribosomal subunit protein eL43A