J3_8YOO_003
3D structure
- PDB id
- 8YOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- CAG*CGUAG*UCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YOO_003 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.1666
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8YOO|1|L5|C|1546
8YOO|1|L5|A|1547
8YOO|1|L5|G|1548
*
8YOO|1|L5|C|1580
8YOO|1|L5|G|1581
8YOO|1|L5|U|1582
8YOO|1|L5|A|1583
8YOO|1|L5|G|1584
*
8YOO|1|L5|U|1609
8YOO|1|L5|C|1610
8YOO|1|L5|C|1611
8YOO|1|L5|G|1612
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LR
- 60S ribosomal protein L19
- Chain Lg
- 60S ribosomal protein L34
- Chain Lp
- 60S ribosomal protein L37a
Coloring options: