J3_8YOO_005

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8YOO|1|L5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YOO_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0723

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8YOO|1|L5|C|2393
8YOO|1|L5|G|2394
8YOO|1|L5|A|2395
8YOO|1|L5|A|2396
8YOO|1|L5|G|2397
8YOO|1|L5|U|2398
8YOO|1|L5|G|2399
*
8YOO|1|L5|C|2805
8YOO|1|L5|A|2806
8YOO|1|L5|A|2807
*
8YOO|1|L5|U|2819
8YOO|1|L5|C|2820
8YOO|1|L5|U|2821
8YOO|1|L5|G|2822

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34