J3_8YOO_008

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YOO_008 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1347

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8YOO|1|L5|C|3937
8YOO|1|L5|G|3938
8YOO|1|L5|G|3939
*
8YOO|1|L5|C|4074
8YOO|1|L5|U|4075
8YOO|1|L5|G|4076
8YOO|1|L5|A|4077
8YOO|1|L5|C|4078
*
8YOO|1|L5|G|4168
8YOO|1|L5|G|4169
8YOO|1|L5|A|4170
8YOO|1|L5|C|4171
8YOO|1|L5|A|4172
8YOO|1|L5|G|4173

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LN

60S ribosomal protein L15