J3_8YOO_025
3D structure
- PDB id
- 8YOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 8YOO|1|L5|G|409, 8YOO|1|L5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YOO_025 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.2851
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8YOO|1|L5|U|380
8YOO|1|L5|U|381
8YOO|1|L5|G|382
8YOO|1|L5|A|383
8YOO|1|L5|A|384
8YOO|1|L5|A|385
8YOO|1|L5|A|386
8YOO|1|L5|G|387
8YOO|1|L5|A|388
8YOO|1|L5|A|389
8YOO|1|L5|C|390
*
8YOO|1|L5|G|401
8YOO|1|L5|A|402
8YOO|1|L5|G|403
8YOO|1|L5|U|404
8YOO|1|L5|U|405
8YOO|1|L5|C|406
8YOO|1|L5|A|407
8YOO|1|L5|A|408
8YOO|1|L5|G|409
8YOO|1|L5|A|410
8YOO|1|L5|G|411
8YOO|1|L5|G|412
8YOO|1|L5|G|413
8YOO|1|L5|C|414
8YOO|1|L5|G|415
*
8YOO|1|L8|C|19
8YOO|1|L8|A|20
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
- Chain LY
- 60S ribosomal protein L26
- Chain Ll
- 60S ribosomal protein L39
Coloring options: