J3_8YOO_028

3D structure

PDB id

8YOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

UU*AGAAG*CGUGGA

Length

13 nucleotides

Bulged bases

8YOO|1|L5|A|1805, 8YOO|1|L5|U|1834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YOO_028 not in the Motif Atlas

Homologous match to J3_8P9A_051

Geometric discrepancy: 0.4154

The information below is about J3_8P9A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84137.1

Basepair signature

cWW-cWW-cHW-F-cSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8YOO|1|L5|U|1726
8YOO|1|L5|U|1727
*
8YOO|1|L5|A|1802
8YOO|1|L5|G|1803
8YOO|1|L5|A|1804
8YOO|1|L5|A|1805
8YOO|1|L5|G|1806
*
8YOO|1|L5|C|1832
8YOO|1|L5|G|1833
8YOO|1|L5|U|1834
8YOO|1|L5|G|1835
8YOO|1|L5|G|1836
8YOO|1|L5|A|1837

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29