J3_8YOP_007

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8YOP|1|L5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|A|2551
8YOP|1|L5|G|2552
8YOP|1|L5|A|2553
8YOP|1|L5|U|2554
8YOP|1|L5|G|2555
*
8YOP|1|L5|C|2572
8YOP|1|L5|A|2573
8YOP|1|L5|G|2574
8YOP|1|L5|U|2575
*
8YOP|1|L5|A|2757
8YOP|1|L5|G|2758
8YOP|1|L5|G|2759
8YOP|1|L5|G|2760
8YOP|1|L5|U|2761
8YOP|1|L5|G|2762
8YOP|1|L5|U|2763
8YOP|1|L5|A|2764
8YOP|1|L5|A|2765
8YOP|1|L5|A|2766
8YOP|1|L5|U|2767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27