J3_8YOP_010

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8YOP|1|L5|A|4464, 8YOP|1|L5|U|4465

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YOP_010 not in the Motif Atlas

Homologous match to J3_8P9A_063

Geometric discrepancy: 0.0753

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8YOP|1|L5|U|4463
8YOP|1|L5|A|4464
8YOP|1|L5|U|4465
8YOP|1|L5|C|4466
*
8YOP|1|L5|G|4491
8YOP|1|L5|U|4492
8YOP|1|L5|U|4493
*
8YOP|1|L5|A|4507
8YOP|1|L5|C|4508
8YOP|1|L5|U|4509
8YOP|1|L5|A|4510
8YOP|1|L5|A|4511
8YOP|1|L5|U|4512
8YOP|1|L5|A|4513

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23