J3_8YOP_037

3D structure

PDB id

8YOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8YOP|1|L5|U|4882, 8YOP|1|L5|A|4938, 8YOP|1|L5|C|4940, 8YOP|1|L5|A|4943, 8YOP|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8YOP|1|L5|G|4751
8YOP|1|L5|U|4752
8YOP|1|L5|U|4753
8YOP|1|L5|G|4754
*
8YOP|1|L5|C|4879
8YOP|1|L5|C|4880
8YOP|1|L5|U|4881
8YOP|1|L5|U|4882
8YOP|1|L5|C|4883
*
8YOP|1|L5|G|4936
8YOP|1|L5|C|4937
8YOP|1|L5|A|4938
8YOP|1|L5|C|4939
8YOP|1|L5|C|4940
8YOP|1|L5|G|4941
8YOP|1|L5|C|4942
8YOP|1|L5|A|4943
8YOP|1|L5|C|4944
8YOP|1|L5|G|4945
8YOP|1|L5|U|4946
8YOP|1|L5|U|4947
8YOP|1|L5|C|4948

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a