J3_8YOP_041
3D structure
- PDB id
- 8YOP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 8YOP|1|S2|A|46
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YOP_041 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0513
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8YOP|1|S2|A|40
8YOP|1|S2|G|41
8YOP|1|S2|A|42
8YOP|1|S2|U|43
8YOP|1|S2|U|44
8YOP|1|S2|A|45
8YOP|1|S2|A|46
8YOP|1|S2|G|47
*
8YOP|1|S2|C|479
8YOP|1|S2|G|480
8YOP|1|S2|C|481
8YOP|1|S2|G|482
8YOP|1|S2|C|483
8YOP|1|S2|A|484
8YOP|1|S2|A|485
8YOP|1|S2|A|486
8YOP|1|S2|U|487
*
8YOP|1|S2|A|512
8YOP|1|S2|G|513
8YOP|1|S2|U|514
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
Coloring options: