J3_8YP6_002
3D structure
- PDB id
- 8YP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GCUUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 8YP6|1|a|U|52, 8YP6|1|a|A|54, 8YP6|1|a|A|55
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YP6_002 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.1609
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8YP6|1|a|G|50
8YP6|1|a|C|51
8YP6|1|a|U|52
8YP6|1|a|U|53
8YP6|1|a|A|54
8YP6|1|a|A|55
8YP6|1|a|C|56
*
8YP6|1|a|G|359
8YP6|1|a|G|360
8YP6|1|a|G|361
8YP6|1|a|G|362
8YP6|1|a|A|363
8YP6|1|a|A|364
8YP6|1|a|U|365
8YP6|1|a|A|366
8YP6|1|a|U|367
*
8YP6|1|a|A|393
8YP6|1|a|G|394
8YP6|1|a|C|395
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain l
- Small ribosomal subunit protein uS12
- Chain p
- Small ribosomal subunit protein bS16
Coloring options: