J3_8YP6_004
3D structure
- PDB id
- 8YP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 8YP6|1|a|A|633
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8YP6_004 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.1949
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8YP6|1|a|U|566
8YP6|1|a|G|567
8YP6|1|a|G|568
*
8YP6|1|a|C|631
8YP6|1|a|U|632
8YP6|1|a|A|633
8YP6|1|a|G|634
8YP6|1|a|A|635
*
8YP6|1|a|U|731
8YP6|1|a|G|732
8YP6|1|a|A|733
8YP6|1|a|C|734
8YP6|1|a|G|735
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain h
- Small ribosomal subunit protein uS8
- Chain l
- Small ribosomal subunit protein uS12
- Chain o
- Small ribosomal subunit protein uS15
- Chain q
- Small ribosomal subunit protein uS17
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