J3_8YP6_014

3D structure

PDB id

8YP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM map of 30S ribosomal subunit in complex with MetAP1c of Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YP6_014 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.2817

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11018.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8YP6|1|a|U|1053
8YP6|1|a|G|1054
*
8YP6|1|a|U|1063
8YP6|1|a|G|1064
8YP6|1|a|U|1065
8YP6|1|a|U|1066
*
8YP6|1|a|G|1079
8YP6|1|a|C|1080
8YP6|1|a|A|1081
8YP6|1|a|A|1082

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

Small ribosomal subunit protein uS5