J3_8YUO_008

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YUO_008 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.0735

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8YUO|1|A|U|943
8YUO|1|A|G|944
8YUO|1|A|G|945
8YUO|1|A|A|946
*
8YUO|1|A|U|1235
8YUO|1|A|A|1236
8YUO|1|A|C|1237
*
8YUO|1|A|G|1337
8YUO|1|A|G|1338
8YUO|1|A|A|1339
8YUO|1|A|A|1340

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain M

30S ribosomal protein S13

Chain V

Transfer RNA; tRNA