J3_8YUO_020

3D structure

PDB id

8YUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complexed with P. putida tRNAIle2 at the A-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8YUO|1|a|U|34, 8YUO|1|a|U|448, 8YUO|1|a|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8YUO_020 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0473

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8YUO|1|a|C|32
8YUO|1|a|C|33
8YUO|1|a|U|34
8YUO|1|a|G|35
*
8YUO|1|a|C|445
8YUO|1|a|G|446
8YUO|1|a|A|447
8YUO|1|a|U|448
8YUO|1|a|A|449
8YUO|1|a|G|450
8YUO|1|a|U|451
8YUO|1|a|G|452
8YUO|1|a|A|453
8YUO|1|a|A|454
8YUO|1|a|C|455
8YUO|1|a|C|456
8YUO|1|a|A|457
8YUO|1|a|G|458
8YUO|1|a|U|459
8YUO|1|a|A|460
8YUO|1|a|C|461
*
8YUO|1|a|G|468
8YUO|1|a|G|469
8YUO|1|a|A|470
8YUO|1|a|A|471
8YUO|1|a|A|472
8YUO|1|a|G|473

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain e

50S ribosomal protein L4

Chain p

50S ribosomal protein L20

Chain s

50S ribosomal protein L23