3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
GC*GCGAAAAG*CC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8YUQ_018 not in the Motif Atlas
Geometric match to J3_5J7L_036
Geometric discrepancy: 0.0526
The information below is about J3_5J7L_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_60031.2
Basepair signature
cWW-cWW-cWW-tWH-tSH-F-F
Number of instances in this motif group
7

Unit IDs

8YUQ|1|a|G|30
8YUQ|1|a|C|31
*
8YUQ|1|a|G|474
8YUQ|1|a|C|475
8YUQ|1|a|G|476
8YUQ|1|a|A|477
8YUQ|1|a|A|478
8YUQ|1|a|A|479
8YUQ|1|a|A|480
8YUQ|1|a|G|481
*
8YUQ|1|a|C|509
8YUQ|1|a|C|510

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
50S ribosomal protein L20
Chain t
50S ribosomal protein L24

Coloring options:


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