3D structure

PDB id
8YUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complexed with P. putida tRNAIle2 and dA4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
8YUQ|1|a|U|34, 8YUQ|1|a|U|448, 8YUQ|1|a|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8YUQ_020 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.0479
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

8YUQ|1|a|C|32
8YUQ|1|a|C|33
8YUQ|1|a|U|34
8YUQ|1|a|G|35
*
8YUQ|1|a|C|445
8YUQ|1|a|G|446
8YUQ|1|a|A|447
8YUQ|1|a|U|448
8YUQ|1|a|A|449
8YUQ|1|a|G|450
8YUQ|1|a|U|451
8YUQ|1|a|G|452
8YUQ|1|a|A|453
8YUQ|1|a|A|454
8YUQ|1|a|C|455
8YUQ|1|a|C|456
8YUQ|1|a|A|457
8YUQ|1|a|G|458
8YUQ|1|a|U|459
8YUQ|1|a|A|460
8YUQ|1|a|C|461
*
8YUQ|1|a|G|468
8YUQ|1|a|G|469
8YUQ|1|a|A|470
8YUQ|1|a|A|471
8YUQ|1|a|A|472
8YUQ|1|a|G|473

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L34
Chain e
50S ribosomal protein L4
Chain p
50S ribosomal protein L20
Chain s
50S ribosomal protein L23

Coloring options:


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