3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AGAUUAAG*CGCGCAAAU*AGU
Length
20 nucleotides
Bulged bases
8Z70|1|2|A|46, 8Z70|1|2|A|47
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Z70_002 not in the Motif Atlas
Homologous match to J3_8P9A_069
Geometric discrepancy: 0.1052
The information below is about J3_8P9A_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_63856.1
Basepair signature
cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8Z70|1|2|A|41
8Z70|1|2|G|42
8Z70|1|2|A|43
8Z70|1|2|U|44
8Z70|1|2|U|45
8Z70|1|2|A|46
8Z70|1|2|A|47
8Z70|1|2|G|48
*
8Z70|1|2|C|431
8Z70|1|2|G|432
8Z70|1|2|C|433
8Z70|1|2|G|434
8Z70|1|2|C|435
8Z70|1|2|A|436
8Z70|1|2|A|437
8Z70|1|2|A|438
8Z70|1|2|U|439
*
8Z70|1|2|A|464
8Z70|1|2|G|465
8Z70|1|2|U|466

Current chains

Chain 2
18S rRNA

Nearby chains

Chain Sc
Small ribosomal subunit protein uS12A
Chain x
Elongation factor 1-alpha 1

Coloring options:


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