J3_8Z70_009

3D structure

PDB id

8Z70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Z70_009 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.2175

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8Z70|1|2|C|1161
8Z70|1|2|C|1162
8Z70|1|2|A|1163
8Z70|1|2|G|1164
*
8Z70|1|2|C|1581
8Z70|1|2|U|1582
8Z70|1|2|A|1583
8Z70|1|2|G|1584
8Z70|1|2|U|1585
8Z70|1|2|A|1586
8Z70|1|2|A|1587
*
8Z70|1|2|U|1609
8Z70|1|2|G|1610
8Z70|1|2|A|1611
8Z70|1|2|U|1612
8Z70|1|2|U|1613
8Z70|1|2|A|1614
8Z70|1|2|C|1615
8Z70|1|2|G|1616

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SB

Small ribosomal subunit protein uS7

Chain SF

Small ribosomal subunit protein uS9A

Chain SL

Small ribosomal subunit protein eS28A