J3_8Z70_015
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 8Z70|1|2|U|1413, 8Z70|1|2|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Z70_015 not in the Motif Atlas
- Geometric match to J3_8C3A_043
- Geometric discrepancy: 0.1741
- The information below is about J3_8C3A_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.3
- Basepair signature
- cWW-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8Z70|1|2|A|1336
8Z70|1|2|A|1337
8Z70|1|2|C|1338
*
8Z70|1|2|G|1386
8Z70|1|2|G|1387
8Z70|1|2|A|1388
8Z70|1|2|C|1389
*
8Z70|1|2|G|1412
8Z70|1|2|U|1413
8Z70|1|2|U|1414
8Z70|1|2|U|1415
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SB
- Small ribosomal subunit protein uS7
- Chain SF
- Small ribosomal subunit protein uS9A
- Chain SG
- Small ribosomal subunit protein eS17A
- Chain SJ
- Small ribosomal subunit protein uS10
- Chain SM
- Small ribosomal subunit protein uS14A
- Chain SO
- Small ribosomal subunit protein RACK1
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