3D structure

PDB id
8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GUC*GCCUAUCGAUCC*GGUGCC
Length
21 nucleotides
Bulged bases
8Z70|1|A|C|2760, 8Z70|1|A|C|2797
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8Z70_034 not in the Motif Atlas
Homologous match to J3_8C3A_056
Geometric discrepancy: 0.0926
The information below is about J3_8C3A_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_27903.1
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
Number of instances in this motif group
5

Unit IDs

8Z70|1|A|G|2651
8Z70|1|A|U|2652
8Z70|1|A|C|2653
*
8Z70|1|A|G|2754
8Z70|1|A|C|2755
8Z70|1|A|C|2756
8Z70|1|A|U|2757
8Z70|1|A|A|2758
8Z70|1|A|U|2759
8Z70|1|A|C|2760
8Z70|1|A|G|2761
8Z70|1|A|A|2762
8Z70|1|A|U|2763
8Z70|1|A|C|2764
8Z70|1|A|C|2765
*
8Z70|1|A|G|2793
8Z70|1|A|G|2794
8Z70|1|A|U|2795
8Z70|1|A|G|2796
8Z70|1|A|C|2797
8Z70|1|A|C|2798

Current chains

Chain A
25S rRNA

Nearby chains

Chain S
Large ribosomal subunit protein eL18A
Chain V
Large ribosomal subunit protein eL21A
Chain c
Large ribosomal subunit protein uL15
Chain q
Large ribosomal subunit protein eL42A

Coloring options:


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