J3_8Z70_046
3D structure
- PDB id
- 8Z70 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 (S1) of yeast 80S ribosome bound to 2 tRNAs during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 8Z70|1|C|U|60, 8Z70|1|C|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Z70_046 not in the Motif Atlas
- Homologous match to J3_8CRE_027
- Geometric discrepancy: 0.0882
- The information below is about J3_8CRE_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8Z70|1|C|A|44
8Z70|1|C|C|45
*
8Z70|1|C|G|58
8Z70|1|C|A|59
8Z70|1|C|U|60
8Z70|1|C|A|61
8Z70|1|C|C|62
8Z70|1|C|G|63
8Z70|1|C|U|64
*
8Z70|1|C|A|96
8Z70|1|C|A|97
8Z70|1|C|U|98
8Z70|1|C|C|99
8Z70|1|C|U|100
Current chains
- Chain C
- 5.8S rRNA
Nearby chains
- Chain Z
- Large ribosomal subunit protein uL23
- Chain j
- Large ribosomal subunit protein uL29A
- Chain l
- Large ribosomal subunit protein eL37A
- Chain n
- Large ribosomal subunit protein eL39
Coloring options: