J3_8Z71_002

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8Z71|1|2|A|46, 8Z71|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8Z71_002 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1052

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8Z71|1|2|A|41
8Z71|1|2|G|42
8Z71|1|2|A|43
8Z71|1|2|U|44
8Z71|1|2|U|45
8Z71|1|2|A|46
8Z71|1|2|A|47
8Z71|1|2|G|48
*
8Z71|1|2|C|431
8Z71|1|2|G|432
8Z71|1|2|C|433
8Z71|1|2|G|434
8Z71|1|2|C|435
8Z71|1|2|A|436
8Z71|1|2|A|437
8Z71|1|2|A|438
8Z71|1|2|U|439
*
8Z71|1|2|A|464
8Z71|1|2|G|465
8Z71|1|2|U|466

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Sc

Small ribosomal subunit protein uS12A

Chain x

Elongation factor 1-alpha 1