J3_8Z71_008
3D structure
- PDB id
- 8Z71 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8Z71|1|2|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8Z71_008 not in the Motif Atlas
- Homologous match to J3_8C3A_037
- Geometric discrepancy: 0.1588
- The information below is about J3_8C3A_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_95208.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8Z71|1|2|C|1037
8Z71|1|2|U|1038
8Z71|1|2|A|1039
*
8Z71|1|2|U|1079
8Z71|1|2|U|1080
8Z71|1|2|A|1081
8Z71|1|2|C|1082
8Z71|1|2|G|1083
*
8Z71|1|2|C|1090
8Z71|1|2|A|1091
8Z71|1|2|A|1092
8Z71|1|2|A|1093
8Z71|1|2|G|1094
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SP
- Small ribosomal subunit protein uS2A
- Chain SR
- Small ribosomal subunit protein uS5
- Chain Sa
- Small ribosomal subunit protein eS21A
- Chain Sb
- Small ribosomal subunit protein uS8A
- Chain Se
- Small ribosomal subunit protein eS26A
- Chain Sf
- Small ribosomal subunit protein eS27A
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