J3_8ZDC_009
3D structure
- PDB id
- 8ZDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8ZDC_009 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.4046
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8ZDC|1|2|U|1340
8ZDC|1|2|C|1341
8ZDC|1|2|U|1342
8ZDC|1|2|U|1343
8ZDC|1|2|A|1344
8ZDC|1|2|G|1345
*
8ZDC|1|2|C|1384
8ZDC|1|2|G|1385
8ZDC|1|2|A|1386
8ZDC|1|2|G|1387
8ZDC|1|2|A|1388
8ZDC|1|2|C|1389
*
8ZDC|1|2|G|1481
8ZDC|1|2|C|1482
8ZDC|1|2|A|1483
8ZDC|1|2|A|1484
8ZDC|1|2|U|1485
8ZDC|1|2|A|1486
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS5
- Chain D
- Small ribosomal subunit protein uS3
- Chain Q
- Small ribosomal subunit protein uS9
- Chain R
- Small ribosomal subunit protein eS17
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain p
- Serine/threonine-protein kinase RIO3
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