J3_8ZDC_011
3D structure
- PDB id
- 8ZDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 8ZDC|1|2|U|1477
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZDC|1|2|C|1391
8ZDC|1|2|U|1392
8ZDC|1|2|G|1393
8ZDC|1|2|G|1394
8ZDC|1|2|C|1395
*
8ZDC|1|2|G|1450
8ZDC|1|2|G|1451
8ZDC|1|2|A|1452
8ZDC|1|2|C|1453
8ZDC|1|2|A|1454
8ZDC|1|2|A|1455
8ZDC|1|2|G|1456
*
8ZDC|1|2|C|1470
8ZDC|1|2|C|1471
8ZDC|1|2|C|1472
8ZDC|1|2|G|1473
8ZDC|1|2|A|1474
8ZDC|1|2|G|1475
8ZDC|1|2|A|1476
8ZDC|1|2|U|1477
8ZDC|1|2|U|1478
8ZDC|1|2|G|1479
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS3
- Chain F
- Small ribosomal subunit protein uS7
- Chain Q
- Small ribosomal subunit protein uS9
- Chain R
- Small ribosomal subunit protein eS17
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain g
- Small ribosomal subunit protein RACK1
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